Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0753012.5a.4a with 3 members (zinc finger protein 131)

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria /

... /

Archelosauria / Archosauria / Neognathae /

Galloanserae /

Completeness score: 0.60

‹

This HOG has 62 similar HOGs:

Loading, please wait...

Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0753012.6a.5a	118	71	zinc finger protein 131
2	HOG:E0753012.5a	56	35	zinc finger protein 131
3	HOG:E0753012	39	170	zinc finger protein 131
4	HOG:E0753012.6a.5a.2b	16	8	zinc finger protein 131
5	HOG:E0753012.6b	5	3	zinc finger protein 131
6	HOG:E0753012.6a	4	74	zinc finger protein 131
7	HOG:E0753012.5a.3a	4	2	zinc finger protein 131
8	HOG:E0629070.1a	4	23	Derived by automated computational analysis using gene prediction method Gnomon
9	HOG:E0753012.4a	3	2	zinc finger protein 131
10	HOG:E0612689	3	6	C2H2-type domain-containing protein
11	HOG:E0753012.6a.5b	2	1	zinc finger protein 131
12	HOG:E0753012.6a.5a.3a	2	1	zinc finger protein 131
13	HOG:E0753012.6a.5a.2a	2	1	zinc finger protein 131
14	HOG:E0753012.5a.4b	2	2	zinc finger protein 131
15	HOG:E0753012.5a.3b	2	1	zinc finger protein 131
16	HOG:E0753012.4b	2	1	zinc finger protein 131
17	HOG:E0753012.2b	2	2	zinc finger protein 131
18	HOG:E0753012.2a	2	2	zinc finger protein 131
19	HOG:E0429488	2	13	C2H2-type domain-containing protein
20	HOG:E0777502	1	2	C2H2-type domain-containing protein
21	HOG:E0754099.2a	1	1	E4F transcription factor
22	HOG:E0753012.5b	1	1	zinc finger protein 131
23	HOG:E0753012.3b	1	1	zinc finger protein 131
24	HOG:E0753012.1b	1	2	zinc finger protein 131
25	HOG:E0753012.1a.2b	1	1	zinc finger protein 131

Showing 1 to 25 of 62 rows rows per page